Setting options in VECTRI

WARNING: OPTION TABLES NEED UPDATING IN DOCUMENTATION

It is possible to set options in VECTRI, . This is done in the file vectri.options which you should save in the sub-directory input.


\begin{block}{vectri.options}
You may open the file vectri.options using the tex...
... you
wish:
\par
{\it parameter1=value,}
\par
{\it parameter2=value,}
\end{block}
The parameters you may specify are given in the follow tables, which associate parameters according to themes:


Table: run control parameters
parameter definition default units
nyearspinup length of spinup period discarded from output 0 years


Table: larvae parameters (version 1.26)
parameter definition default units
neggmn eggs laid per female vector 80  
nlayingmax maximum number of vectors allow to lay (-ve no limit) -99  
rlarv_tmax maximum temperature for larvae survival 35 deg C
rlarv_eggtime time for egg hatching 1.0 days
rlarv_pupaetime time for pupae stage 1.0 days
rlarv_flushmin minimal daily survival L1 larvae after intense rainfall 0.4  
rlarv_flushtau exponential decay of flushing with rainrate 50 mm day$^{-1}$
rmasslarv_stage4 mass of L4 larvae 0.45 mg
biocapacity larvae biomass carry capacity of pools 300 mg m$^{-2}$
rlarvsurv base survival rate due to preditation 0.825  


Table: larvae parameter (version 1.3)
parameter definition default units
neggmn eggs laid per female vector 80  
nlayingmax maximum number of vectors allow to lay (-ve no limit) -99  
rlarv_tmin minimum temperature for larvae survival 16 deg C
rlarv_tmax maximum temperature for larvae survival 37 deg C
rlarv_eggtime time for egg hatching 1.0 days
rlarv_pupaetime time for pupae stage 1.0 days
rlarv_flushmin minimal daily survival L1 larvae after intense rainfall 0.4  
rlarv_flushtau exponential decay of flushing with rainrate 50 mm day$^{-1}$
rmasslarv_stage4 mass of L4 larvae 0.45 mg
biocapacity larvae biomass carry capacity of pools 300 mg m$^{-2}$
rlarvsurv base survival rate due to preditation 0.825  


Table: hydrology (version 1.26, a new beta scheme is available in 1.3)
parameter paper definition default units
ipud_vers   puddle parametrization version (125/126/130) 126  
rwaterfrac_perm $w_0$ permanent breeding site fraction 10$^{-6}$  
rwaterfrac_max $w_{max}$ maximum coverage by breeding sites 0.04  
rwaterfrac_rate $K_{w}$ pond geometry factor 10$^{-3}$ mm$^{-1}$
rwaterfrac_evap126 $E+I$ infiltration and evaporation rate loss of ponds 250 mm day$^{-1}$
rwater_tempoffset $T_{wat}$ temperature offset of pond to air 0 deg C


Table: interventions
parameter definition default units
rnobednetuse proportional of host NOT using bednet 1  
rbednettreat (INOPERATIVE) proportion of bednets insecticide treated 0.0  


Table: biting parameters
parameter definition default units
rzoophilic_tau e-folding population density for zoophilicity rate 50$^{-4}$ m$^{-2}$
rzoophilic_min minimum anthropophilic bite rate at low population densities 0.1  
rbiteratio bite rate success 0.6 per day


Table: gonotrophic and sporogenic
parameter definition default units
rtgono threshold temperature for egg development in vector 7.7 deg C
dgono degree days for egg development in vector 37.1 days
rtsporo threshold temperature for parasite development 16.0 deg C
dsporo degree days for for parasite development 111 days


Table: population
parameter definition default units
rpop_growth population growth rate 1.0 ratio per year
rpopdensity_min minimum population density considered 10$^{-6}$ m$^{-2}$
rmigration simple migration fraction imported cases 0.0 year$^{-1}$


Table: toy climate
parameter definition default units
rtemperature_offset temperature offset 0.0 deg C
rtemperature_trend temperature trend 0.0 deg C yr $^{-1}$
rrainfall_factor ratio to scale rainfall by 1.0