Welcome to VECTRI’s documentation!

Contents:

• 1. Prologue
  • 1.1. History
  • 1.2. VECTRI - What it is
  • 1.3. VECTRI - What it isn’t
  • 1.4. A Note on this manual
• 2. Prerequisites
  • 2.1. Libraries and software requirements
    • 2.1.1. Mac Users
    • 2.1.2. Windows 10+ users
    • 2.1.3. Note on GRIB
  • 2.2. Directories
  • 2.3. Download the code
    • 2.3.1. Updating the code
  • 2.4. Setting up the Environment
    • 2.4.1. NETCDF variables
    • 2.4.2. Permanently setting
• 3. Running VECTRI
  • 3.1. Key input fields
    • 3.1.1. climate fields
    • 3.1.2. Population fields
  • 3.2. Example Simulation
• 4. Output
  • 4.1. NCDUMP
  • 4.2. NCVIEW
  • 4.3. Output Variables
• 5. Command Line Options
• 6. VECTRI Description
  • 6.1. Typical Climate sensities of VBD
  • 6.2. VECTRI structure
  • 6.3. Vector lifecycle
  • 6.4. Pathogen lifecycle
  • 6.5. Disease lifecycle
    • 6.5.1. Malaria
    • 6.5.2. Dengue
  • 6.6. Hydrology
    • 6.6.1. Temporary Pond parameterization
    • 6.6.2. Urban breeding sites
    • 6.6.3. permanent water features
• 7. Model Parameters
  • 7.1. How to set parameters
    • 7.1.1. Command line input
    • 7.1.2. vectri.options file
    • 7.1.3. Fortran changes
  • 7.2. Parameter settings tables
    • 7.2.1. Simulation parameters
    • 7.2.2. Vector parameters
    • 7.2.3. Disease parameters
    • 7.2.4. Hydrology parameters
    • 7.2.5. Population parameters
    • 7.2.6. Interventions parameters
• 8. Simulation nitialization
  • 8.1. Cold start
  • 8.2. Spinning up the model
  • 8.3. Restarting the model
• 9. Data Overview
  • 9.1. Climate input
  • 9.2. Population density
  • 9.3. Soil types
  • 9.4. SIT interventions
  • 9.5. Bednets
• 10. Interventions
  • 10.1. Sterile Insect Technique
  • 10.2. Bednet distribution
• 11. Toolkit of useful scripts
  • 11.1. Getting population data
  • 11.2. Getting ERA5 driver files
  • 11.3. Converting CSV station data to netcdf
  • 11.4. Creating a constant climate driver file
  • 11.5. Running large ensembles in parallel
• 12. Calibration
  • 12.1. Overview
  • 12.2. Software

#Indices and tables #=================

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